phylonet.recomp

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Package phylonet.recomp

This package contains an implementation of the RECOMP method - a technique for detecting regions of recombination among a set of sequences.

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Description

Interface Summary
WindowComparator

Class Summary
RECOMP	This class provides an implementation of the RECOMP algorithm described in the publication: D.

Package phylonet.recomp Description

This package contains an implementation of the RECOMP method - a technique for detecting regions of recombination among a set of sequences. The method is described in the following papers:

D. Ruths and L. Nakhleh. "RECOMP: A Parsimony-Based Method for Detecting Recombination." In Proc. of 4th Asia Pacific Bioinformatics Conference, 2006.
D. Ruths and L. Nakhleh. "Recombination and Phylogeny: Effects and Detection." International Journal on Bioinformatics Research and Applications, 1(2):202-212, 2005.