Uses of Class
phylonet.recomp.comparator.PAUPWindowComparator.DistanceMeasure

Packages that use PAUPWindowComparator.DistanceMeasure

phylonet.app.tool.recomp
phylonet.recomp.comparator

Uses of PAUPWindowComparator.DistanceMeasure in phylonet.app.tool.recomp

Methods in phylonet.app.tool.recomp that return PAUPWindowComparator.DistanceMeasure

PAUPWindowComparator.DistanceMeasure

RECOMPParamsDialog.getDistanceMeasure()

Constructors in phylonet.app.tool.recomp with parameters of type PAUPWindowComparator.DistanceMeasure

RECOMPResultsDialog(PhyloNetAppView view, java.util.Date date, SequenceAlignmentDatum sequenceAlignmentDatum, int windowSize, int stepSize, RECOMPParamsDialog.ComparisonFunction comparisonFunction, PAUPWindowComparator.DistanceMeasure distanceMeasure, java.io.File paupFile, int popSize, int iterations, int levels, double[] breakpoints)
Instantiates a new results dialog for the "RECOMP" tool.

Uses of PAUPWindowComparator.DistanceMeasure in phylonet.recomp.comparator

Methods in phylonet.recomp.comparator that return PAUPWindowComparator.DistanceMeasure

static PAUPWindowComparator.DistanceMeasure	PAUPWindowComparator.DistanceMeasure.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static PAUPWindowComparator.DistanceMeasure[]	PAUPWindowComparator.DistanceMeasure.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in phylonet.recomp.comparator with parameters of type PAUPWindowComparator.DistanceMeasure

PAUPAvgMaxComparator(java.io.File paup_path, int pop_size, int num_iterations, int num_levels, PAUPWindowComparator.DistanceMeasure dm)

PAUPAvgMinComparator(java.io.File paup_path, int pop_size, int num_iterations, int num_levels, PAUPWindowComparator.DistanceMeasure dm)

PAUPIntersectionComparator(java.io.File paup_path, int pop_size, int num_iterations, int num_levels, PAUPWindowComparator.DistanceMeasure dm)

PAUPWindowComparator(java.io.File paup_path, int pop_size, int num_iterations, PAUPWindowComparator.DistanceMeasure dm)