phylonet.cmdline
Class CommandLineAppTestCase

java.lang.Object
  phylonet.cmdline.CommandLineAppTestCase

public class CommandLineAppTestCase
extends java.lang.Object

Constructor Summary

CommandLineAppTestCase()

Method Summary

void	testToolCharnetCluster()
void	testToolCharnetTree()
void	testToolCharnetTripartition()
void	testToolCmpNetsCluster()
void	testToolCmpNetsClusterWithoutMeasureArgument()
void	testToolCmpNetsTree()
void	testToolCmpNetsTreeWithoutMeasureArgument()
void	testToolCmpNetsTripartition()
void	testToolCmpNetsTripartitionWithoutMeasureArgument()
void	testToolCountCoal()
void	testToolInferSTInvalidMethod()
void	testToolLCA()
void	testToolMASTMultiple()
void	testToolMASTSingle()
void	testToolNetparsMultiple()
void	testToolRF()
void	testToolRIATAHGT()
void	toolCharnetShouldRejectInvalidInputFile()
void	toolCharnetShouldRejectInvalidMeasure()
void	toolCharnetShouldRejectMissingFilename()
void	toolCharnetShouldRejectMissingMeasureType()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CommandLineAppTestCase

public CommandLineAppTestCase()

Method Detail

testToolCountCoal

public void testToolCountCoal()
                       throws java.lang.Exception

Throws:

java.lang.Exception

testToolLCA

public void testToolLCA()
                 throws java.lang.Exception

Throws:

java.lang.Exception

testToolMASTSingle

public void testToolMASTSingle()
                        throws java.lang.Exception

Throws:

java.lang.Exception

testToolMASTMultiple

public void testToolMASTMultiple()
                          throws java.lang.Exception

Throws:

java.lang.Exception

testToolRF

public void testToolRF()
                throws java.lang.Exception

Throws:

java.lang.Exception

testToolRIATAHGT

public void testToolRIATAHGT()
                      throws java.lang.Exception

Throws:

java.lang.Exception

testToolCharnetCluster

public void testToolCharnetCluster()
                            throws java.lang.Exception

Throws:

java.lang.Exception

testToolCharnetTripartition

public void testToolCharnetTripartition()
                                 throws java.lang.Exception

Throws:

java.lang.Exception

testToolCharnetTree

public void testToolCharnetTree()
                         throws java.lang.Exception

Throws:

java.lang.Exception

toolCharnetShouldRejectInvalidMeasure

public void toolCharnetShouldRejectInvalidMeasure()
                                           throws java.lang.Exception

Throws:

java.lang.Exception

toolCharnetShouldRejectInvalidInputFile

public void toolCharnetShouldRejectInvalidInputFile()
                                             throws java.lang.Exception

Throws:

java.lang.Exception

toolCharnetShouldRejectMissingMeasureType

public void toolCharnetShouldRejectMissingMeasureType()
                                               throws java.lang.Exception

Throws:

java.lang.Exception

toolCharnetShouldRejectMissingFilename

public void toolCharnetShouldRejectMissingFilename()
                                            throws java.lang.Exception

Throws:

java.lang.Exception

testToolCmpNetsCluster

public void testToolCmpNetsCluster()
                            throws java.lang.Exception

Throws:

java.lang.Exception

testToolCmpNetsClusterWithoutMeasureArgument

public void testToolCmpNetsClusterWithoutMeasureArgument()
                                                  throws java.lang.Exception

Throws:

java.lang.Exception

testToolCmpNetsTree

public void testToolCmpNetsTree()
                         throws java.lang.Exception

Throws:

java.lang.Exception

testToolCmpNetsTreeWithoutMeasureArgument

public void testToolCmpNetsTreeWithoutMeasureArgument()
                                               throws java.lang.Exception

Throws:

java.lang.Exception

testToolCmpNetsTripartition

public void testToolCmpNetsTripartition()
                                 throws java.lang.Exception

Throws:

java.lang.Exception

testToolCmpNetsTripartitionWithoutMeasureArgument

public void testToolCmpNetsTripartitionWithoutMeasureArgument()
                                                       throws java.lang.Exception

Throws:

java.lang.Exception

testToolNetparsMultiple

public void testToolNetparsMultiple()
                             throws java.lang.Exception

Throws:

java.lang.Exception

testToolInferSTInvalidMethod

public void testToolInferSTInvalidMethod()
                                  throws java.lang.Exception

Throws:

java.lang.Exception