Uses of Class
phylonet.app.controller.PhyloNetAppController

Packages that use PhyloNetAppController

phylonet.app.controller.datum
phylonet.app.tool
phylonet.app.tool.charnet
phylonet.app.tool.cmpnets
phylonet.app.tool.countcoal
phylonet.app.tool.inferst
phylonet.app.tool.lca
phylonet.app.tool.mast
phylonet.app.tool.netpars
phylonet.app.tool.recomp
phylonet.app.tool.rf
phylonet.app.tool.riatahgt

Uses of PhyloNetAppController in phylonet.app.controller.datum

Methods in phylonet.app.controller.datum with parameters of type PhyloNetAppController

static ADatumController

ADatumController.makeDatumController(PhyloNetAppController parentController, ADatum datum, ADatumView datumView) Returns a controller of the correct type for the supplied ADatum.

Constructors in phylonet.app.controller.datum with parameters of type PhyloNetAppController

ADatumController(PhyloNetAppController parentController, ADatum datum, ADatumView datumView)
Instantiates a new ADatumController with the given parent, model, and view.

BatchDatumController(PhyloNetAppController parentController, BatchDatum batchDatum, BatchDatumView batchDatumView)
Instantiates a new BatchDatumController using the given parent controller, batch datum, and batch datum view.

HGTDatumController(PhyloNetAppController parentController, HGTDatum hgtDatum, HGTDatumView hgtDatumView)
Instantiates a new controller to manage the supplied model and view.

NetworkDatumController(PhyloNetAppController parentController, NetworkDatum networkDatum, NetworkDatumView networkDatumView)
Instantiates a new controller to manage the supplied model and view.

SequenceAlignmentDatumController(PhyloNetAppController parentController, SequenceAlignmentDatum sequenceListDatum, SequenceAlignmentDatumView sequenceListDatumView)
Instantiates a new controller for the given model and view.

TreeDatumController(PhyloNetAppController parentController, TreeDatum treeDatum, TreeDatumView treeDatumView)
Instantiates a new TreeDatumController with the given parent controller, model, and view elements.

Uses of PhyloNetAppController in phylonet.app.tool

Constructors in phylonet.app.tool with parameters of type PhyloNetAppController

APhyloTool(PhyloNetAppController parentController, java.lang.String menuText, java.lang.String toolTipText)
Instantiates a new PhyloNet tool using the given top-level controller.

Uses of PhyloNetAppController in phylonet.app.tool.charnet

Constructors in phylonet.app.tool.charnet with parameters of type PhyloNetAppController

CharnetClusterResultsDialog(java.awt.Frame owner, java.util.Date date, PhyloNetAppController parentController, NetworkDatum inputNetwork, java.util.List<NetworkCluster<java.lang.Object>> clusters)
Instantiates a new results dialog for the CHARNET tool that has been used to calculate the clusters of a network.

CharnetTool(PhyloNetAppController parentController)
Instantiates a new CHARNET tool.

CharnetTreeResultsDialog(java.awt.Frame owner, java.util.Date date, PhyloNetAppController parentController, NetworkDatum inputNetwork, java.util.List<Tree> trees)
Instantiates a new results dialog for the CHARNET tool that has been used to calculate the trees of a network.

CharnetTripartitionResultsDialog(java.awt.Frame owner, java.util.Date date, PhyloNetAppController parentController, NetworkDatum inputNetworkDatum, java.util.List<NetworkTripartition<java.lang.Object>> tris)
Instantiates a new results dialog for the CHARNET tool that has been used to calculate the tripartitions of a network.

Uses of PhyloNetAppController in phylonet.app.tool.cmpnets

Constructors in phylonet.app.tool.cmpnets with parameters of type PhyloNetAppController

CmpnetsTool(PhyloNetAppController parentController)
Instantiates a new CMPNETS tool.

Uses of PhyloNetAppController in phylonet.app.tool.countcoal

Constructors in phylonet.app.tool.countcoal with parameters of type PhyloNetAppController

CountCoalTool(PhyloNetAppController parentController)
Instantiates a new COUNTCOAL tool.

Uses of PhyloNetAppController in phylonet.app.tool.inferst

Constructors in phylonet.app.tool.inferst with parameters of type PhyloNetAppController

InferSTTool(PhyloNetAppController parentController)
Instantiates a new INFER_ST tool.

Uses of PhyloNetAppController in phylonet.app.tool.lca

Constructors in phylonet.app.tool.lca with parameters of type PhyloNetAppController

LCATool(PhyloNetAppController parentController)
Instantiates a new LCA tool.

Uses of PhyloNetAppController in phylonet.app.tool.mast

Constructors in phylonet.app.tool.mast with parameters of type PhyloNetAppController

MastTool(PhyloNetAppController parentController)
Instantiates a new MAST tool.

Uses of PhyloNetAppController in phylonet.app.tool.netpars

Constructors in phylonet.app.tool.netpars with parameters of type PhyloNetAppController

NetparsTool(PhyloNetAppController parentController)
Instantiates a new NETPARS tool.

Uses of PhyloNetAppController in phylonet.app.tool.recomp

Constructors in phylonet.app.tool.recomp with parameters of type PhyloNetAppController

RecompTool(PhyloNetAppController parentController)
Instantiates a new RECOMP tool.

Uses of PhyloNetAppController in phylonet.app.tool.rf

Constructors in phylonet.app.tool.rf with parameters of type PhyloNetAppController

RFTool(PhyloNetAppController parentController)
Instantiates a new RF tool.

Uses of PhyloNetAppController in phylonet.app.tool.riatahgt

Constructors in phylonet.app.tool.riatahgt with parameters of type PhyloNetAppController

RIATAHGTTool(PhyloNetAppController parentController)
Instantiates a new RIATA-HGT tool.