Constant Field Values

Contents

• phylonet.algorithms.*
• phylonet.app.*
• phylonet.bits.*
• phylonet.graph.*
• phylonet.maxclique.*
• phylonet.network.*
• phylonet.riatahgt.*
• phylonet.tree.*

phylonet.algorithms.*

phylonet.algorithms.bipartitemaching.HungarianBipartiteMatcher

public static final double

NO_EDGE

-1d/0d

phylonet.algorithms.pairalignment.SmithWaterman

public static final java.lang.String

PAM_CHAR_MAP

"ABCDEFGHIKLMNPQRSTVWYZ"

phylonet.app.*

phylonet.app.tool.AParamsDialog

public static final int

DEFAULT_LABEL_ALIGNMENT

4

phylonet.app.tool.inferst.InferSTParamsDialog

public static final int	LEFT_COLUMN_WIDTH	180
public static final int	RIGHT_COLUMN_WIDTH	500

phylonet.app.util.Dialogs

public static final int

DEFAULT_WRAP_WIDTH

80

phylonet.bits.*

phylonet.bits.BitVector

public static final int

BITSTRING_FORMAT

0

phylonet.graph.*

phylonet.graph.model.Edge

public static final double

NO_WEIGHT

0d/0d

phylonet.graph.model.GraphComponent

public static final java.lang.String

NO_NAME

""

phylonet.maxclique.*

phylonet.maxclique.MaxClique

public static final boolean	CLIQUES	false
public static final boolean	INDEPENDENT_SETS	true

phylonet.network.*

phylonet.network.model.NetNode<T>

public static final double	NO_DISTANCE	-1d/0d
public static final java.lang.String	NO_NAME	""

phylonet.network.util.Networks

public static final java.lang.String

NAME_PREFIX

"I"

phylonet.riatahgt.*

phylonet.riatahgt.viewer.TreeCanvas

public static final int	ARROW_LENGTH	10
public static final int	LAYER_HEIGHT	50
public static final int	NODE_WIDTH	50
public static final int	ROOT_EDGE_LENGTH	40
public static final int	Y_GUTTER	20

phylonet.tree.*

phylonet.tree.model.TNode

public static final double	NO_DISTANCE	-1d/0d
public static final java.lang.String	NO_NAME	""

phylonet.tree.model.Tree

public static final int	NEWICK_FORMAT	0
public static final java.lang.String	NO_NAME	""

phylonet.tree.model.sti.STITree<D>

public static final java.lang.String

NO_NAME

""

phylonet.tree.util.Consolidate

public static final java.lang.String	CONSOLIDATE_POSTFIX	"_con_"
public static final java.lang.String	CONSOLIDATE_PREFIX	"_con_"